1. E. Caron, R. Roncagalli, T. Hase, W. Wolski, T. Hase, M. Choi, M. G. Menoita, S. Durand, A. Garcia-Blesa, I. Fierro-Monti, T. Sajic, M. Heusel, T. Weiss, M. Malissen, R. Schlapbach, B. Collins, S. Ghosh, H. Kitano, R. Aebersold, B. Malissen, M. Gstaiger. “Precise temporal profiling of GRB2 protein complexes in primary T cells using SWATH mass spectrometry”. Cell Reports, DOI:http://dx.doi.org/10.1016/j.celrep.2017.03.019, 2017.

  2. S.E. Abbatiello, B.L. Ackermann, C.H. Borchers, R.A. Bradshaw, S.A. Carr, R.J. Chalkley, M. Choi, E.W. Deutsch, B. Domon, A.N. Hoofnagle, H. Keshishian, E. Kuhn, D.C. Liebler, M.J. MacCoss, B. MacLean, D.R. Mani, H. Neubert, D. Smith, O. Vitek, L. Zimmerman. “New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins”, Molecular & Cellular Proteomics, doi:10.1074/mcp.E117.067801, 2017.

  3. M. Choi#, Z. F. Eren-Dogu#, C. Colangelo, J. Cottrell, M. R. Hoopmann, E. A. Kapp, S. Kim, H. Lam, T. A. Neubert, M. Palmblad, B. S. Phinney, S. T. Weintraub, B. MacLean, O. Vitek. “ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments”. Journal of Proteome Research, doi:10.1021/acs.jproteome.6b00881, 2017.

  4. C. Terfve, E. Sabidó, Y.Wu, E.Gonc¸alves, M. Choi, S. Vaga, O. Vitek, J. Saez-Rodriguez, R. Aebersold. “Systemwide quantitative proteomics of the metabolic syndrome in mice: genotypic and dietary effects”. Journal of Proteome Research, doi:10.1021/acs.jproteome.6b00815, 2016.

  5. E. Borràs, E. Cantó, M. Choi, L. M. Villar, J.C. Álvarez-Cermenño, C. Chiva, X. Montalban, O. Vitek, M. Comabella, E. Sabidó. “Protein-based classifier to predict conversion from Clinically Isolated Syndrome to Multiple Sclerosis”. Molecular & Cellular Proteomics, doi:10.1074/mcp.M115.053256, 2015.

  6. S. Surinova, M. Choi, S. Tao, P. Schüffler, C. Chang, T. Clough, K. Vysloužil, M. Khoylou, J. Srovnal, Y. Liu, M. Matondo, R.Hüttenhain, H.Weisser, J. M. Buhmann, M. Hajdúch, H. Brenner, O. Vitek, R. Aebersold. “Prediction of colorectal cancer diagnosis based on circulating plasma protein”. EMBO Molecular Medicine, 7(9), 1166-1178,

  8. S. Surinova, L. Radová, M. Choi, J. Srovnal, H. Brenner, O. Vitek, M. Hajdúch, R. Aebersold, “Non-invasive prognostic protein biomarker signatures associated with colorectal cancer”. EMBO Molecular Medicine, 7(9), 1153-1165, 2015.

  9. M. Choi, C. Chang, T. Clough, D. Broudy, T. Killeen, B. MacLean, O. Vitek. “MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments”. Bioinformatics, 30:2524-2536, 2014.

  10. D. Broudy, T. Killeen, M. Choi, N. Shulman, D. Mani, S. Abbatiello, D. Mani, R. Ahmad, A. Sahu, B. Schilling, K.Tamura, Y. Boss, V. Sharma, B. Gibson, S. Carr, O. Vitek, M. MacCoss, B. MacLean. “A framework for installable external tools in Skyline”. Bioinformatics. 30:2521-2523, 2014.

  11. F. Cerciello, M. Choi, A. Nicastri, D. Bausch-Fluck, A. Ziegler, O. Vitek, E. Felley-Bosco, R. Stahel, R. Aebersold, B.Wollscheid. “Identifcation of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring”. Clinical Proteomics, 10:16, 2013.

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